metrics.workflows module
- run_calculate_analysis(database_path: str, simulation_path: str, seed: str, features: list[str], timepoints: list[float], observation_timepoints: list[float], samples: dict, comparisons: dict) None [source]
Run the statistical test on data with the specified feature and sampling method.
- Parameters
database_path – File path to the database file for reading simulation and for writing stats.
simulation_path – File path to a folder of simulation files.
seed – The seed of simulation file.
features – The name of the features.
timepoints – The timepoints to perform statistical test.
observation_timepoints – The timepoints of observations to perform statistical test.
samples – Sample parameter definitions.
comparisons – The comparisons to perform.
- run_parse_simulations(database_file: str, simulation_path: str, seed: str, timepoints: List[float]) None [source]
Parse the simulation and write data into databse file.
- Parameters
database_file – File path to the database file.
simulation_path – File path to a folder of simulation files.
seed – The seed of simulation file.
timepoints – The timepoints to parse the simulation data.