metrics.workflows module

run_calculate_analysis(database_path: str, simulation_path: str, seed: str, features: list[str], timepoints: list[float], observation_timepoints: list[float], samples: dict, comparisons: dict) → None

Run the statistical test on data with the specified feature and sampling method.

Parameters

• database_path – File path to the database file for reading simulation and for writing stats.

• simulation_path – File path to a folder of simulation files.

• seed – The seed of simulation file.

• features – The name of the features.

• timepoints – The timepoints to perform statistical test.

• observation_timepoints – The timepoints of observations to perform statistical test.

• samples – Sample parameter definitions.

• comparisons – The comparisons to perform.

run_parse_simulations(database_file: str, simulation_path: str, seed: str, timepoints: List[float]) → None

Parse the simulation and write data into databse file.

Parameters

• database_file – File path to the database file.

• simulation_path – File path to a folder of simulation files.

• seed – The seed of simulation file.

• timepoints – The timepoints to parse the simulation data.